RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00032 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00032 Molecule name [?]: NMR STRUCTURE OF SRP RNA DOMAIN IV Source [?]: RCSB Protein Data Bank Source ID [?]: 1CQ5 Reference [?]: U.SCHMITZ,S.BEHRENS,D.M.FREYMANN,R.J.KEENAN, P.LUKAVSKY,P.WALTER,T.L.JAMES. STRUCTURE OF THE PHYLOGENETICALLY MOST CONSERVED DOMAIN OF SRP RNA.. RNA V. 5 1419 1999 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 43 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00033 Number of domains [?]: 1 Number of unpaired bases [?]: 13 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 6 Average length of a stem [?]: 5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -5.7 Average estimated free energy [?]: -7.87 Minimum estimated free energy [?]: -12.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 2.75 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 4 Average internal loop relative asymmetry: 2.5 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AA non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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