RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00036 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00036 Molecule name [?]: 29-MER FRAGMENT OF HUMAN SRP RNA HELIX 6 Source [?]: RCSB Protein Data Bank Source ID [?]: 1D4R Reference [?]: K.WILD,O.WEICHENRIEDER,G.A.LEONARD,S.CUSACK. THE 2 A STRUCTURE OF HELIX 6 OF THE HUMAN SIGNAL RECOGNITION PARTICLE RNA. STRUCTURE FOLD.DES. V. 7 1345 1999 ASTM FODEFH UK ISSN 1359-0278 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 84 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 30 Number of paired bases [?]: 54

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 27 Maximum length of a stem [?]: 14 Average length of a stem [?]: 13.5 Minimum length of a stem [?]: 13 Maximum estimated free energy [?]: -19 Average estimated free energy [?]: -19 Minimum estimated free energy [?]: -19

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 7 Total number of AC non-canonical base pairs: 4 Total number of AG non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 2

Pseudoknot features

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