RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00038
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00038
Molecule name [
?
]:
CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMA
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1DQH
Reference [
?
]:
Y.XIONG,M.SUNDARALINGAM. TWO CRYSTAL FORMS OF HELIX II OF XENOPUS LAEVIS 5S RRNA WITH A CYTOSINE BULGE.. RNA V. 6 1316 2000 ASTM RNARFU UK ISSN 1355-8382
Type [
?
]:
Other Ribosomal RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 1.70 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
19
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00037
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
1
Number of paired bases [
?
]:
18
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
2
Number of base pairs in stems [
?
]:
9
Maximum length of a stem [
?
]:
6
Average length of a stem [
?
]:
4.5
Minimum length of a stem [
?
]:
3
Maximum estimated free energy [
?
]:
-6.7
Average estimated free energy [
?
]:
-9.85
Minimum estimated free energy [
?
]:
-13
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
0
Average number of free bases in hairpin loops [
?
]:
0
Minimum number of free bases in hairpin loop [
?
]:
0
Bulge loop features
Number of bulge loops [
?
]:
1
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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