RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00059
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00059
Molecule name [?]:SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) H
Source [?]:RCSB Protein Data Bank
Source ID [?]:1F78
Reference [?]:M.SCHMITZ,I.TINOCO JR.. SOLUTION STRUCTURE AND METAL-ION BINDING OF THE P4 ELEMENT FROM BACTERIAL RNASE P RNA.. RNA V. 6 1212 2000 ASTM RNARFU UK ISSN 1355-8382
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:27
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00057, PDB_00061, PDB_00063, PDB_00975, PDB_00977
Number of domains [?]:1
Number of unpaired bases [?]:7
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-8.7
Average estimated free energy [?]:-9.95
Minimum estimated free energy [?]:-11.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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