RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00067
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00067
Molecule name [?]:	SOLUTION STRUCTURE OF A 22-NUCLEOTIDE HAIRPIN SIMILAR TO THE P5ABC REGION OF A GROUP I RIBOZYME WITH
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1F9L
Reference [?]:	S.RUDISSER,I.TINOCO JR.. SOLUTION STRUCTURE OF COBALT(III)HEXAMMINE COMPLEXED TO THE GAAA TETRALOOP, AND METAL-ION BINDING TO G.A MISMATCHES.. J.MOL.BIOL. V. 295 1211 2000 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Other Ribozyme	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00049
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-12.9
Average estimated free energy [?]:	-12.9
Minimum estimated free energy [?]:	-12.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	3
Total number of AG non-canonical base pairs:	3

Pseudoknot features