RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00075
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00075
Molecule name [?]:EUKARYOTIC DECODING REGION A-SITE RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1FYO
Reference [?]:S.R.LYNCH,J.D.PUGLISI. STRUCTURE OF A EUKARYOTIC DECODING REGION A-SITE RNA.. J.MOL.BIOL. V. 306 1023 2001 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:TETRAHYMENA THERMOPHILA
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:27
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00076
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:22

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:11
Maximum length of a stem [?]:6
Average length of a stem [?]:5.5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-9.1
Average estimated free energy [?]:-9.4
Minimum estimated free energy [?]:-9.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:1.5
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:2
Minimum internal loop relative asymmetry:2

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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