RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00083
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00083
Molecule name [?]:SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA)
Source [?]:RCSB Protein Data Bank
Source ID [?]:1HS1
Reference [?]:H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH. STRUCTURAL CHARACTERIZATION OF SIX-NUCLEOTIDE RNA HAIRPIN LOOPS: R(UUAAUU), R(UUAAAU), R(UUAACU). TO BE PUBLISHED
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:13
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:8

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:4
Maximum length of a stem [?]:4
Average length of a stem [?]:4
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-5.8
Average estimated free energy [?]:-5.8
Minimum estimated free energy [?]:-5.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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