RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00089
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00089
Molecule name [?]:SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1I3X
Reference [?]:S.C.BLANCHARD,J.D.PUGLISI. SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA.. PROC.NATL.ACAD.SCI.USA V. 98 3720 2001 ASTM PNASA6 US ISSN 0027-8424
Type [?]:23S Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:19
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00090
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-17.6
Average estimated free energy [?]:-17.6
Minimum estimated free energy [?]:-17.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of CU non-canonical base pairs:1

Pseudoknot features



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