RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00096
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00096
Molecule name [?]:	CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1I9X
Reference [?]:	J.A.BERGLUND,M.ROSBASH,S.C.SCHULTZ. CRYSTAL STRUCTURE OF A MODEL BRANCHPOINT-U2 SNRNA DUPLEX CONTAINING BULGED ADENOSINES.. RNA V. 7 682 2001 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Small nuclear RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.18 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	26
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	4
Average length of a stem [?]:	4
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-5.6
Average estimated free energy [?]:	-6
Minimum estimated free energy [?]:	-6.8

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	2
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features