RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00096
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00096
Molecule name [?]:CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX
Source [?]:RCSB Protein Data Bank
Source ID [?]:1I9X
Reference [?]:J.A.BERGLUND,M.ROSBASH,S.C.SCHULTZ. CRYSTAL STRUCTURE OF A MODEL BRANCHPOINT-U2 SNRNA DUPLEX CONTAINING BULGED ADENOSINES.. RNA V. 7 682 2001 ASTM RNARFU UK ISSN 1355-8382
Type [?]:Small nuclear RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.18 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:26
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:2
Number of paired bases [?]:24

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:12
Maximum length of a stem [?]:4
Average length of a stem [?]:4
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-5.6
Average estimated free energy [?]:-6
Minimum estimated free energy [?]:-6.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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