RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00099
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00099
Molecule name [?]:	SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY RBD12 OF
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1IE2
Reference [?]:	P.BOUVET,F.H.ALLAIN,L.D.FINGER,T.DIECKMANN,J.FEIGON. RECOGNITION OF PRE-FORMED AND FLEXIBLE ELEMENTS OF AN RNA STEM-LOOP BY NUCLEOLIN.. J.MOL.BIOL. V. 309 763 2001 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00407, PDB_00098
Number of domains [?]:	1
Number of unpaired bases [?]:	10
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-10
Average estimated free energy [?]:	-10
Minimum estimated free energy [?]:	-10

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	10
Average number of free bases in hairpin loops [?]:	10
Minimum number of free bases in hairpin loop [?]:	10

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features