RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00100 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00100 Molecule name [?]: SOLUTION STRUCTURE OF AN RNA HAIRPIN FROM HRV-14 Source [?]: RCSB Protein Data Bank Source ID [?]: 1IK1 Reference [?]: H.HUANG,A.ALEXANDROV,X.CHEN,T.W.BARNES 3RD., H.ZHANG,K.DUTTA,S.M.PASCAL. STRUCTURE OF AN RNA HAIRPIN FROM HRV-14.. BIOCHEMISTRY V. 40 8055 2001 ASTM BICHAW US ISSN 0006-2960 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 14 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 10

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 5 Maximum length of a stem [?]: 5 Average length of a stem [?]: 5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -9 Average estimated free energy [?]: -9 Minimum estimated free energy [?]: -9

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 3 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia