RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00103
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00103
Molecule name [?]:	SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE)
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1J4Y
Reference [?]:	J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ. SOLUTION CONFORMATIONS OF UNMODIFIED AND A(37)N(6)-DIMETHYLALLYL MODIFIED ANTICODON STEM-LOOPS OF ESCHERICHIA COLI TRNA(PHE).. J.MOL.BIOL. V. 319 1015 2002 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	E. COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00129
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-14.3
Average estimated free energy [?]:	-14.3
Minimum estimated free energy [?]:	-14.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features