RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00107
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00107
Molecule name [?]:SOLUTION STRUCTURE OF INFLUENZA A VIRUS PROMOTER
Source [?]:RCSB Protein Data Bank
Source ID [?]:1JO7
Reference [?]:S.H.BAE,H.K.CHEONG,J.H.LEE,C.CHEONG,M.KAINOSHO, B.S.CHOI. STRUCTURAL FEATURES OF AN INFLUENZA VIRUS PROMOTER AND THEIR IMPLICATIONS FOR VIRAL RNA SYNTHESIS.. PROC.NATL.ACAD.SCI.USA V. 98 10602 2001 ASTM PNASA6 US ISSN 0027-8424
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:31
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:9
Number of paired bases [?]:22

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:11
Maximum length of a stem [?]:7
Average length of a stem [?]:5.5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-8.4
Average estimated free energy [?]:-8.6
Minimum estimated free energy [?]:-8.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:4
Average number of free bases in internal loops:3.5
Minimum number of free bases in internal loop:3
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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