RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00109
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00109
Molecule name [?]:NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITHOUT RESIDUAL DIPOLAR COUPLI
Source [?]:RCSB Protein Data Bank
Source ID [?]:1JP0
Reference [?]:T.C.LEEPER,M.B.MARTIN,H.KIM,S.COX,V.SEMENCHENKO, F.J.SCHMIDT,S.R.VAN DOREN. STRUCTURE OF THE UGAGAU HEXALOOP THAT BRACES BACILLUS RNASE P FOR ACTION.. NAT.STRUCT.BIOL. V. 9 397 2002 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:21
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00108
Number of domains [?]:1
Number of unpaired bases [?]:7
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:5
Average length of a stem [?]:3.5
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-3.4
Average estimated free energy [?]:-6.55
Minimum estimated free energy [?]:-9.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia