RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00116 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00116 Molecule name [?]: STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON Source [?]: RCSB Protein Data Bank Source ID [?]: 1K2G Reference [?]: A.KITAMURA,Y.MUTO,S.WATANABE,I.KIM,T.ITO,Y.NISHIYA, K.SAKAMOTO,T.OHTSUKI,G.KAWAI,K.WATANABE,K.HOSONO, H.TAKAKU,E.KATOH,T.YAMAZAKI,T.INOUE,S.YOKOYAMA. SOLUTION STRUCTURE OF AN RNA FRAGMENT WITH THE P7/P9.0 REGION AND THE 3'-TERMINAL GUANOSINE OF THE TETRAHYMENA GROUP I INTRON.. RNA V. 8 440 2002 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Group I Intron [?]     PS figure     PDF figure Figure from original source Organism [?]: TETRAHYMENA THERMOPHILA Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 22 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 3 Average length of a stem [?]: 3 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -3.35 Minimum estimated free energy [?]: -4.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 3 Minimum number of free bases in hairpin loop [?]: 2 Total number of UUCG hairpin motifs per molecule [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia