RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00117
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Format:
Molecule ID [?]:PDB_00117
Molecule name [?]:STRUCTURE OF AGAA RNA TETRALOOP, NMR, 20 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1K4A
Reference [?]:H.WU,P.K.YANG,S.E.BUTCHER,S.KANG,G.CHANFREAU, J.FEIGON. A NOVEL FAMILY OF RNA TETRALOOP STRUCTURE FORMS THE RECOGNITION SITE FOR SACCHAROMYCES CEREVISIAE RNASE III.. EMBO J. V. 20 7240 2001 ASTM EMJODG UK ISSN 0261-4189
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:14
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:2
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-8.8
Average estimated free energy [?]:-8.8
Minimum estimated free energy [?]:-8.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AA non-canonical base pairs:1

Pseudoknot features



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