RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00129
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Format:
Molecule ID [?]:PDB_00129
Molecule name [?]:SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE)
Source [?]:RCSB Protein Data Bank
Source ID [?]:1KKA
Reference [?]:J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ. SOLUTION CONFORMATIONS OF UNMODIFIED AND A(37)N(6)-DIMETHYLALLYL MODIFIED ANTICODON STEM-LOOPS OF ESCHERICHIA COLI TRNA(PHE).. J.MOL.BIOL. V. 319 1015 2002 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:E. COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00103
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:7
Average length of a stem [?]:7
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-14.3
Average estimated free energy [?]:-14.3
Minimum estimated free energy [?]:-14.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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