RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00137
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00137
Molecule name [?]:	NMR STRUCTURE OF A SRP19 BINDING DOMAIN IN HUMAN SRP RNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1L1W
Reference [?]:	T.SAKAMOTO,S.MORITA,K.TABATA,K.NAKAMURA,G.KAWAI. SOLUTION STRUCTURE OF A SRP19 BINDING DOMAIN IN HUMAN SRP RNA.. J.BIOCHEM.(TOKYO) V. 132 177 2002 ASTM JOBIAO JA ISSN 0021-924X
Type [?]:	Signal Recognition Particle RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	29
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	26

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	13
Maximum length of a stem [?]:	13
Average length of a stem [?]:	13
Minimum length of a stem [?]:	13
Maximum estimated free energy [?]:	-20.2
Average estimated free energy [?]:	-20.2
Minimum estimated free energy [?]:	-20.2

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	3
Total number of AC non-canonical base pairs:	2
Total number of GG non-canonical base pairs:	1

Pseudoknot features