RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00142
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00142
Molecule name [?]:SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, 25 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1LDZ
Reference [?]:C.G.HOOGSTRATEN,P.LEGAULT,A.PARDI. NMR SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME: EVIDENCE FOR DYNAMICS IN RNA CATALYSIS.. J.MOL.BIOL. V. 284 337 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Other Ribozyme

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:30
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00242
Number of domains [?]:1
Number of unpaired bases [?]:6
Number of paired bases [?]:24

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:12
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-8.5
Average estimated free energy [?]:-9.45
Minimum estimated free energy [?]:-10.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:3
Average number of free bases in internal loops:2
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:2
Average internal loop absolute asymmetry:2
Minimum internal loop absolute asymmetry:2
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:3
Minimum internal loop relative asymmetry:3

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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