RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00143
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00143
Molecule name [?]:	SOLUTION STRUCTURE OF THE UNMODIFIED U2 SNRNA-INTRON BRANCH SITE HELIX FROM S. CEREVISIAE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1LMV
Reference [?]:	M.I.NEWBY,N.L.GREENBAUM. SCULPTING OF THE SPLICEOSOMAL BRANCH SITE RECOGNITION MOTIF BY A CONSERVED PSEUDOURIDINE. NAT.STRUCT.BIOL. V. 9 958 2002 ASTM NSBIEW US ISSN 1072-8368
Type [?]:	Group I Intron	[?] PS figure PDF figure Figure from original source
Organism [?]:	SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	19
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	1
Number of paired bases [?]:	18

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	9
Maximum length of a stem [?]:	5
Average length of a stem [?]:	4.5
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-5.6
Average estimated free energy [?]:	-7.7
Minimum estimated free energy [?]:	-9.8

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features