RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00145
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00145
Molecule name [?]:SOLUTION STRUCTURE OF THE YEAST SPLICEOSOMAL U2 SNRNA- INTRON BRANCH SITE HELIX FEATURING A CONSERVE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1LPW
Reference [?]:M.I.NEWBY,N.L.GREENBAUM. SCULPTING OF THE SPLICEOSOMAL BRANCH SITE RECOGNITION MOTIF BY A CONSERVED PSEUDOURIDINE. NAT.STRUCT.BIOL. V. 12 958 2002 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Small nuclear RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:19
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:4
Average length of a stem [?]:4
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-5.6
Average estimated free energy [?]:-6.6
Minimum estimated free energy [?]:-7.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:1.5
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:2
Minimum internal loop relative asymmetry:2

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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