RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00151
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Format:

Molecule ID [?]:	PDB_00151
Molecule name [?]:	CHIMERIC HAIRPIN WITH 2',5'-LINKED RNA LOOP AND RNA STEM
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1ME1
Reference [?]:	A.Y.DENISOV,R.N.HANNOUSH,K.GEHRING,M.J.DAMHA. A NOVEL RNA MOTIF BASED ON THE STRUCTURE OF UNUSUALLY STABLE 2',5'-LINKED R(UUCG) LOOPS. J.AM.CHEM.SOC. V. 125 11525 2003 ASTM JACSAT US ISSN 0002-7863
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	12
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	10

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	5
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-10
Average estimated free energy [?]:	-10
Minimum estimated free energy [?]:	-10

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features