RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00151
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00151
Molecule name [?]:CHIMERIC HAIRPIN WITH 2',5'-LINKED RNA LOOP AND RNA STEM
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ME1
Reference [?]:A.Y.DENISOV,R.N.HANNOUSH,K.GEHRING,M.J.DAMHA. A NOVEL RNA MOTIF BASED ON THE STRUCTURE OF UNUSUALLY STABLE 2',5'-LINKED R(UUCG) LOOPS. J.AM.CHEM.SOC. V. 125 11525 2003 ASTM JACSAT US ISSN 0002-7863
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:2
Number of paired bases [?]:10

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:5
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-10
Average estimated free energy [?]:-10
Minimum estimated free energy [?]:-10

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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