RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00152 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00152 Molecule name [?]: 3' STEM-LOOP FROM HUMAN U4 SNRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1MFJ Reference [?]: L.R.COMOLLI,N.B.ULYANOV,A.M.SOTO,L.A.MARKY, T.L.JAMES,W.H.GMEINER. NMR STRUCTURE OF THE 3' STEM-LOOP FROM HUMAN U4 SNRNA. NUCLEIC ACIDS RES. V. 30 4371 2002 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Small nuclear RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 20 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -15.4 Average estimated free energy [?]: -15.4 Minimum estimated free energy [?]: -15.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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