RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00153
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00153
Molecule name [?]:	STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1MFK
Reference [?]:	D.FOURMY,E.GUITTET,S.YOSHIZAWA. STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN AND ITS INTERACTION WITH ELONGATION FACTOR SELB. J.MOL.BIOL. V. 324 137 2002 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	23
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_01204
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	6
Average length of a stem [?]:	5
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-7.6
Average estimated free energy [?]:	-11.1
Minimum estimated free energy [?]:	-14.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features