RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00154
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00154
Molecule name [?]:SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MFY
Reference [?]:M.-K.LEE,S.-H.BAE,C.-J.PARK,H.-K.CHEONG,C.CHEONG, B.-S.CHOI. A SINGLE-NUCLEOTIDE NATURAL VARIATION (U4 TO C4) IN AN INFLUENZA A VIRUS PROMOTER EXHIBITS A LARGE STRUCTURAL CHANGE: IMPLICATIONS FOR DIFFERENTIAL VIRAL RNA SYNTHESIS BY RNA-DEPENDENT RNA POLYMERASE.. NUCLEIC ACIDS RES. V. 31 1216 2003 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:31
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:17
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:4
Average length of a stem [?]:3.5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-3.3
Average estimated free energy [?]:-6.05
Minimum estimated free energy [?]:-8.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:4
Average number of free bases in internal loops:4
Minimum number of free bases in internal loop:4
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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