RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00156
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00156
Molecule name [?]:	STRUCTURE OF RNA (5'-R(GPCPGPGPAPCPGP*C)-3') ANTI- PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATC
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1MIS
Reference [?]:	M.WU,D.H.TURNER. SOLUTION STRUCTURE OF (RGCGGACGC)2 BY TWO-DIMENSIONAL NMR AND THE ITERATIVE RELAXATION MATRIX APPROACH.. BIOCHEMISTRY V. 35 9677 1996 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-11.6
Average estimated free energy [?]:	-11.6
Minimum estimated free energy [?]:	-11.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AG non-canonical base pairs:	2

Pseudoknot features