RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00160
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00160
Molecule name [?]:	STRUCTURE OF 23S RIBOSOMAL RNA HAIRPIN 35
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1MT4
Reference [?]:	I.LEBARS,S.YOSHIZAWA,A.R.STENHOLM,E.GUITTET, S.DOUTHWAITE,D.FOURMY. STRUCTURE OF 23S RRNA HAIRPIN 35 AND ITS INTERACTION WITH THE TYLOSIN-RESISTANCE METHYLTRANSFERASE RLMAII. EMBO J. V. 22 183 2003 ASTM EMJODG UK ISSN 0261-4189
Type [?]:	23S Ribosomal RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	24
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	6
Number of paired bases [?]:	18

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	9
Maximum length of a stem [?]:	9
Average length of a stem [?]:	9
Minimum length of a stem [?]:	9
Maximum estimated free energy [?]:	-15.7
Average estimated free energy [?]:	-15.7
Minimum estimated free energy [?]:	-15.7

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	6
Average number of free bases in hairpin loops [?]:	6
Minimum number of free bases in hairpin loop [?]:	6

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features