RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00163 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00163 Molecule name [?]: THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2 Source [?]: RCSB Protein Data Bank Source ID [?]: 1MV2 Reference [?]: B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER. MOLECULAR RECOGNITION IN PURINE-RICH INTERNAL LOOPS: THERMODYNAMIC, STRUCTURAL, AND DYNAMIC CONSEQUENCES OF PURINE FOR ADENINE SUBSTITUTIONS IN 5'(RGGCAAGCCU)2. BIOCHEMISTRY V. 41 14978 2002 ASTM BICHAW US ISSN 0006-2960 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 18 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00161, PDB_00162, PDB_00164 Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -13.4 Average estimated free energy [?]: -13.4 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 2

Pseudoknot features

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