RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00168 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00168 Molecule name [?]: SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1N53 Reference [?]: M.S.GERDEMAN,T.M.HENKIN,J.V.HINES. SOLUTION STRUCTURE OF THE BACILLUS SUBTILIS T-BOX ANTITERMINATOR RNA: SEVEN NUCLEOTIDE BULGE CHARACTERIZED BY STACKING AND FLEXIBILITY. J.MOL.BIOL. V. 326 189 2003 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 25 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 13 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 4 Average length of a stem [?]: 3 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.5 Average estimated free energy [?]: -5.15 Minimum estimated free energy [?]: -7.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 8 Average number of free bases in internal loops: 4.5 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 7 Average internal loop absolute asymmetry: 7 Minimum internal loop absolute asymmetry: 7 Maximum internal loop relative asymmetry: 8 Average internal loop relative asymmetry: 8 Minimum internal loop relative asymmetry: 8

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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