RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00171
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00171
Molecule name [?]:SOLUTION STRUCTURE OF THE P2B HAIRPIN FROM HUMAN TELOMERASE RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1NA2
Reference [?]:C.A.THEIMER,L.D.FINGER,L.TRANTIREK,J.FEIGON. MUTATIONS LINKED TO DYSKERATOSIS CONGENITA CAUSE CHANGES IN THE STRUCTURAL EQUILIBRIUM IN TELOMERASE RNA. PROC.NATL.ACAD.SCI.USA V. 100 449 2003 ASTM PNASA6 US ISSN 0027-8424
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:30
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:6
Number of paired bases [?]:24

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:12
Maximum length of a stem [?]:12
Average length of a stem [?]:12
Minimum length of a stem [?]:12
Maximum estimated free energy [?]:-16.6
Average estimated free energy [?]:-16.6
Minimum estimated free energy [?]:-16.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:5
Average number of free bases in hairpin loops [?]:5
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of CU non-canonical base pairs:1
Total number of UU non-canonical base pairs:3

Pseudoknot features



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