RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00180
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00180
Molecule name [?]:P6.1 STEM LOOP FROM THE ACTIVATION DOMAIN OF HTR
Source [?]:RCSB Protein Data Bank
Source ID [?]:1OQ0
Reference [?]:T.LEEPER,N.LEULLIOT,G.VARANI. THE SOLUTION STRUCTURE OF AN ESSENTIAL STEM-LOOP OF HUMAN TELOMERASE RNA. NUCLEIC ACIDS RES. V. 31 2614 2003 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:15
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-11.5
Average estimated free energy [?]:-11.5
Minimum estimated free energy [?]:-11.5

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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