RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00188
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Format:
Molecule ID [?]:PDB_00188
Molecule name [?]:STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1PBM
Reference [?]:M.POPENDA,E.BIALA,J.MILECKI,R.W.ADAMIAK. SOLUTION STRUCTURE OF RNA DUPLEXES CONTAINING ALTERNATING CG BASE PAIRS: NMR STUDY OF R(CGCGCG)2 AND 2'-O-ME(CGCGCG)2 UNDER LOW SALT CONDITIONS.. NUCLEIC ACIDS RES. V. 25 4589 1997 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00071, NDB_00072, NDB_00075, PDB_00455, PDB_00639, PDB_00729, PDB_01288
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-14
Average estimated free energy [?]:-14
Minimum estimated free energy [?]:-14

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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