RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00192
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00192
Molecule name [
?
]:
CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1Q93
Reference [
?
]:
C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS, Y.L.CHAN. THE COMMON AND DISTINCTIVE FEATURES OF THE BULGED-G MOTIF BASED ON A 1.04 A RESOLUTION RNA STRUCTURE. NUCLEIC ACIDS RES. V. 31 6806 2003 ASTM NARHAD UK ISSN 0305-1048
Type [
?
]:
Other Ribosomal RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.25 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
3
Length [
?
]:
81
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
3
Number of unpaired bases [
?
]:
9
Number of paired bases [
?
]:
72
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
6
Number of base pairs in stems [
?
]:
36
Maximum length of a stem [
?
]:
8
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
4
Maximum estimated free energy [
?
]:
0
Average estimated free energy [
?
]:
-5.5
Minimum estimated free energy [
?
]:
-11
Hairpin loop features
Number of hairpin loops [
?
]:
3
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
3
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
15
Total number of AA non-canonical base pairs:
3
Total number of AG non-canonical base pairs:
6
Total number of CC non-canonical base pairs:
3
Total number of CU non-canonical base pairs:
3
Pseudoknot features
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