RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00193 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00193 Molecule name [?]: CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1Q96 Reference [?]: C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS, Y.L.CHAN. THE COMMON AND DISTINCTIVE FEATURES OF THE BULGED-G MOTIF BASED ON A 1.04 A RESOLUTION RNA STRUCTURE. NUCLEIC ACIDS RES. V. 31 6806 2003 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.75 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 81 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 9 Number of paired bases [?]: 72

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 36 Maximum length of a stem [?]: 8 Average length of a stem [?]: 6 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -5.5 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 15 Total number of AA non-canonical base pairs: 3 Total number of AG non-canonical base pairs: 6 Total number of CC non-canonical base pairs: 3 Total number of CU non-canonical base pairs: 3

Pseudoknot features

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