RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00195 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00195 Molecule name [?]: CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS Source [?]: RCSB Protein Data Bank Source ID [?]: 1QBP Reference [?]: A.C.ANDERSON,R.H.O'NEIL,D.J.FILMAN,C.A.FREDERICK. CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS: AN INVESTIGATION INTO RNA CONFORMATIONAL VARIABILITY.. BIOCHEMISTRY V. 38 12577 1999 ASTM BICHAW US ISSN 0006-2960 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 6 Length [?]: 84 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 0 Number of paired bases [?]: 84

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 42 Maximum length of a stem [?]: 14 Average length of a stem [?]: 14 Minimum length of a stem [?]: 14 Maximum estimated free energy [?]: -26.8 Average estimated free energy [?]: -26.8 Minimum estimated free energy [?]: -26.8

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 6 Total number of CU non-canonical base pairs: 6

Pseudoknot features

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