RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00198
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Format:

Molecule ID [?]:	PDB_00198
Molecule name [?]:	TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1QES
Reference [?]:	J.A.MCDOWELL,L.HE,X.CHEN,D.H.TURNER. INVESTIGATION OF THE STRUCTURAL BASIS FOR THERMODYNAMIC STABILITIES OF TANDEM GU WOBBLE PAIRS: NMR STRUCTURES OF (RGGAGUUCC)2 AND (RGGAUGUCC)2.. BIOCHEMISTRY V. 36 8030 1997 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-11.3
Average estimated free energy [?]:	-11.3
Minimum estimated free energy [?]:	-11.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features