RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00212
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00212
Molecule name [?]:CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1RXB
Reference [?]:S.PORTMANN,N.USMAN,M.EGLI. THE CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES.. BIOCHEMISTRY V. 34 7569 1995 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00001, PDB_00235, PDB_00916
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-22.2
Average estimated free energy [?]:-22.2
Minimum estimated free energy [?]:-22.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia