RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00216
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00216
Molecule name [?]:FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, MINIMIZED AVERAGE STRUCTURE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1SLO
Reference [?]:N.L.GREENBAUM,I.RADHAKRISHNAN,D.J.PATEL,D.HIRSH. SOLUTION STRUCTURE OF THE DONOR SITE OF A TRANS-SPLICING RNA.. STRUCTURE V. 4 725 1996 ASTM STRUE6 UK ISSN 0969-2126
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:19
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00217
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:5
Average length of a stem [?]:3.5
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.1
Average estimated free energy [?]:-4.9
Minimum estimated free energy [?]:-7.7

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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