RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00225
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Format:
Molecule ID [?]:PDB_00225
Molecule name [?]:STRUCTURE OF AN RNA HAIRPIN LOOP WITH A 5'-CGUUUCG-3' LOOP MOTIF BY HETERONUCLEAR NMR SPECTROSCOPY A
Source [?]:RCSB Protein Data Bank
Source ID [?]:1UUU
Reference [?]:C.SICH,O.OHLENSCHLAGER,R.RAMACHANDRAN,M.GORLACH, L.R.BROWN. STRUCTURE OF AN RNA HAIRPIN LOOP WITH A 5'-CGUUUCG-3' LOOP MOTIF BY HETERONUCLEAR NMR SPECTROSCOPY AND DISTANCE GEOMETRY.. BIOCHEMISTRY V. 36 13989 1997 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:19
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:7
Average length of a stem [?]:7
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-14.8
Average estimated free energy [?]:-14.8
Minimum estimated free energy [?]:-14.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:5
Average number of free bases in hairpin loops [?]:5
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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