RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00232
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00232
Molecule name [?]:	GAGA RNA TETRALOOP, NMR, 10 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1ZIG
Reference [?]:	F.M.JUCKER,H.A.HEUS,P.F.YIP,E.H.MOORS,A.PARDI. A NETWORK OF HETEROGENEOUS HYDROGEN BONDS IN GNRA TETRALOOPS.. J.MOL.BIOL. V. 264 968 1996 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	12
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	10

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	5
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-8.8
Average estimated free energy [?]:	-8.8
Minimum estimated free energy [?]:	-8.8

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features