RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00241
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00241
Molecule name [?]:RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE
Source [?]:RCSB Protein Data Bank
Source ID [?]:2BJ2
Reference [?]:A.J.LEE,D.M.CROTHERS. THE SOLUTION STRUCTURE OF AN RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE.. STRUCTURE V. 6 993 1998 ASTM STRUE6 UK ISSN 0969-2126
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:40
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00020
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:40

Click on any header below for additional features.

Stem features


Hairpin loop features

Number of hairpin loops [?]:0
Maximum number of free bases in hairpin loops [?]:N/A
Average number of free bases in hairpin loops [?]:N/A
Minimum number of free bases in hairpin loop [?]:N/A

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:3
Number of base pairs in bands:20
Maximum band length:7
Average band length:6.67
Minimum band length:6
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:3
Minimum number of bands per pseudoknot:3
Maximum number of un-bands:0
Average number of un-bands:0
Minimum number of un-bands:0
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:0
Average number of unpaired bases:0
Minimum number of unpaired bases:0
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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