RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00259
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00259
Molecule name [?]:RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:3TRA
Reference [?]:E.WESTHOF,P.DUMAS,D.MORAS. RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS.. ACTA CRYSTALLOGR., SECT.A V. 44 112 1988 ASTM ACACEQ DK ISSN 0108-7673
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:YEAST
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:72
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:24
Number of paired bases [?]:48

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:24
Maximum length of a stem [?]:7
Average length of a stem [?]:6
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-3.6
Average estimated free energy [?]:-10.23
Minimum estimated free energy [?]:-14.4

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:6
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:3
Average number of free bases in multi-loops:1.25
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:1.83
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:1.5
Average multi-loop relative asymmetry:0.36
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AA non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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