RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00285
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00285
Molecule name [
?
]:
STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 ST
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1A1T
Reference [
?
]:
R.N.DE GUZMAN,Z.R.WU,C.C.STALLING,L.PAPPALARDO, P.N.BORER,M.F.SUMMERS. STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT.. SCIENCE V. 279 384 1998 ASTM SCIEAS US ISSN 0036-8075
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
HUMAN IMMUNODEFICIENCY VIRUS 1
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
20
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00021
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
4
Number of paired bases [
?
]:
16
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
8
Maximum length of a stem [
?
]:
8
Average length of a stem [
?
]:
8
Minimum length of a stem [
?
]:
8
Maximum estimated free energy [
?
]:
-16.8
Average estimated free energy [
?
]:
-16.8
Minimum estimated free energy [
?
]:
-16.8
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
4
Average number of free bases in hairpin loops [
?
]:
4
Minimum number of free bases in hairpin loop [
?
]:
4
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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