RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00376 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00376 Molecule name [?]: CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE Source [?]: RCSB Protein Data Bank Source ID [?]: 1EXD Reference [?]: T.L.BULLOCK,L.D.SHERLIN,J.J.PERONA. TERTIARY CORE REARRANGEMENTS IN A TIGHT BINDING TRANSFER RNA APTAMER.. NAT.STRUCT.BIOL. V. 7 497 2000 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 73 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 29 Number of paired bases [?]: 44

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 22 Maximum length of a stem [?]: 8 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -10.42 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1.25 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 1.83 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1.5 Average multi-loop relative asymmetry: 0.36 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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