RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00398 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00398 Molecule name [?]: TRNA POSITIONS DURING THE ELONGATION CYCLE Source [?]: RCSB Protein Data Bank Source ID [?]: 1FCW Reference [?]: R.K.AGRAWAL,C.M.SPAHN,P.PENCZEK,R.A.GRASSUCCI, K.H.NIERHAUS,J.FRANK. VISUALIZATION OF TRNA MOVEMENTS ON THE ESCHERICHIA COLI 70S RIBOSOME DURING THE ELONGATION CYCLE.. J.CELL.BIOL. V. 150 447 2000 ASTM JCLBA3 US ISSN 0021-9525 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SACCHAROMYCES CEREVISIAE Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION17.00 ANGSTROMS; ran through RNAview Number of molecules [?]: 5 Length [?]: 380 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 5 Number of unpaired bases [?]: 174 Number of paired bases [?]: 206

Click on any header below for additional features.

Stem features Number of stems [?]: 20 Number of base pairs in stems [?]: 103 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.15 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.4 Minimum estimated free energy [?]: -10.6

Hairpin loop features Number of hairpin loops [?]: 15 Maximum number of free bases in hairpin loops [?]: 15 Average number of free bases in hairpin loops [?]: 8.27 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 5 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 0.42 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AG non-canonical base pairs: 5

Pseudoknot features

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