RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00425 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00425 Molecule name [?]: STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE Source [?]: RCSB Protein Data Bank Source ID [?]: 1GTR Reference [?]: M.A.ROULD,J.J.PERONA,T.A.STEITZ. STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE.. NATURE V. 352 213 1991 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 74 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00426, PDB_00620, PDB_00621, PDB_00669, PDB_00670, PDB_00671, PDB_00672, PDB_00901, PDB_01258, PDB_01259 Number of domains [?]: 1 Number of unpaired bases [?]: 30 Number of paired bases [?]: 44

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 22 Maximum length of a stem [?]: 8 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -10.42 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 0.42 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AC non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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