RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00513
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00513
Molecule name [?]:CRYSTAL STRUCTURE OF THE E. COLI PSEUDOURIDINE SYNTHASE TRUB BOUND TO A T STEM-LOOP RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1K8W
Reference [?]:C.HOANG,A.R.FERRE-D'AMARE. COCRYSTAL STRUCTURE OF A TRNA PSI55 PSEUDOURIDINE SYNTHASE: NUCLEOTIDE FLIPPING BY AN RNA-MODIFYING ENZYME.. CELL V. 107 929 2001 ASTM CELLB5 US ISSN 0092-8674
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.85 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:22
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00902
Number of domains [?]:1
Number of unpaired bases [?]:8
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:7
Average length of a stem [?]:7
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-14.3
Average estimated free energy [?]:-14.3
Minimum estimated free energy [?]:-14.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia