RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00569
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00569
Molecule name [?]:FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MJ1
Reference [?]:H.STARK,M.V.RODNINA,H.-J.WIEDEN,F.ZEMLIN, W.WINTERMEYER,M.VAN HEEL. RIBOSOME INTERACTIONS OF AMINOACYL-TRNA AND ELONGATION FACTOR TU IN THE CODON RECOGNITION COMPLEX. NAT.STRUCT.BIOL. V. 9 849 2002 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION13.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:152
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00722
Number of domains [?]:2
Number of unpaired bases [?]:62
Number of paired bases [?]:90

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:45
Maximum length of a stem [?]:7
Average length of a stem [?]:5.62
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.2
Average estimated free energy [?]:-8.8
Minimum estimated free energy [?]:-10.6

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:6.67
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.33
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:2
Average multi-loop relative asymmetry:0.42
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AC non-canonical base pairs:2
Total number of AG non-canonical base pairs:2

Pseudoknot features



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