RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00637 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00637 Molecule name [?]: CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB Source [?]: RCSB Protein Data Bank Source ID [?]: 1P6V Reference [?]: S.GUTMANN,P.W.HAEBEL,L.METZINGER,M.SUTTER,B.FELDEN, N.BAN. CRYSTAL STRUCTURE OF THE TRANSFER-RNA DOMAIN OF TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB. NATURE V. 424 699 2003 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: AQUIFEX AEOLICUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.20 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 69 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 27 Number of paired bases [?]: 42

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 21 Maximum length of a stem [?]: 8 Average length of a stem [?]: 7 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -12.4 Average estimated free energy [?]: -13.4 Minimum estimated free energy [?]: -13.9

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 4 Total number of UUCG hairpin motifs per molecule [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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