RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00649
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Format:
Molecule ID [?]:PDB_00649
Molecule name [?]:CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERM
Source [?]:RCSB Protein Data Bank
Source ID [?]:1Q2S
Reference [?]:W.XIE,X.LIU,R.H.HUANG. CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERMEDIATE. NAT.STRUCT.BIOL. V. 10 781 2003 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ZYMOMONAS MOBILIS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.20 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:39
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:13
Number of paired bases [?]:26

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:13
Maximum length of a stem [?]:7
Average length of a stem [?]:6.5
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-13.4
Average estimated free energy [?]:-13.4
Minimum estimated free energy [?]:-13.4

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:6.5
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AA non-canonical base pairs:1

Pseudoknot features



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